Molecular analysis of rice plants harboring a multi-functional T-DNA tagging system.
Identifieur interne : 003561 ( Main/Exploration ); précédent : 003560; suivant : 003562Molecular analysis of rice plants harboring a multi-functional T-DNA tagging system.
Auteurs : Yimian Ma [République populaire de Chine] ; Luo Liu ; Chengguang Zhu ; Changhui Sun ; Bo Xu ; Jun Fang ; Jiuyou Tang ; Anding Luo ; Shouyun Cao ; Gupo Li ; Qian Qian ; Yongbiao Xue ; Chengcai ChuSource :
- Journal of genetics and genomics = Yi chuan xue bao [ 1673-8527 ] ; 2009.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), Chromosomes de plante (génétique), Glucuronidase (génétique), Glucuronidase (métabolisme), Gènes rapporteurs (MeSH), Génome végétal (MeSH), Mutagenèse par insertion (MeSH), Oryza (croissance et développement), Oryza (génétique), Oryza (métabolisme), Rhizobium (génétique), Rhizobium (métabolisme), Transformation génétique (MeSH), Vecteurs génétiques (génétique).
- MESH :
- croissance et développement : Oryza.
- génétique : ADN bactérien, Chromosomes de plante, Glucuronidase, Oryza, Rhizobium, Vecteurs génétiques.
- métabolisme : Glucuronidase, Oryza, Rhizobium.
- Gènes rapporteurs, Génome végétal, Mutagenèse par insertion, Transformation génétique.
English descriptors
- KwdEn :
- Chromosomes, Plant (genetics), DNA, Bacterial (genetics), Genes, Reporter (MeSH), Genetic Vectors (genetics), Genome, Plant (MeSH), Glucuronidase (genetics), Glucuronidase (metabolism), Mutagenesis, Insertional (MeSH), Oryza (genetics), Oryza (growth & development), Oryza (metabolism), Rhizobium (genetics), Rhizobium (metabolism), Transformation, Genetic (MeSH).
- MESH :
- chemical , genetics : DNA, Bacterial, Glucuronidase.
- genetics : Chromosomes, Plant, Genetic Vectors, Oryza, Rhizobium.
- growth & development : Oryza.
- chemical , metabolism : Glucuronidase, Oryza, Rhizobium.
- Genes, Reporter, Genome, Plant, Mutagenesis, Insertional, Transformation, Genetic.
Abstract
About 25,000 rice T-DNA insertional mutant lines were generated using the vector pCAS04 which has both promoter-trapping and activation-tagging function. Southern blot analysis revealed that about 40% of these mutants were single copy integration and the average T-DNA insertion number was 2.28. By extensive phenotyping in the field, quite a number of agronomically important mutants were obtained. Histochemical GUS assay with 4,310 primary mutants revealed that the GUS-staining frequency was higher than that of the previous reports in various tissues and especially high in flowers. The T-DNA flanking sequences of some mutants were isolated and the T-DNA insertion sites were mapped to the rice genome. The flanking sequence analysis demonstrated the different integration pattern of the right border and left border into rice genome. Compared with Arabidopsis and poplar, it is much varied in the T-DNA border junctions in rice.
DOI: 10.1016/S1673-8527(08)60114-9
PubMed: 19447374
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Liu</name></author><author><name sortKey="Zhu, Chengguang" sort="Zhu, Chengguang" uniqKey="Zhu C" first="Chengguang" last="Zhu">Chengguang Zhu</name></author><author><name sortKey="Sun, Changhui" sort="Sun, Changhui" uniqKey="Sun C" first="Changhui" last="Sun">Changhui Sun</name></author><author><name sortKey="Xu, Bo" sort="Xu, Bo" uniqKey="Xu B" first="Bo" last="Xu">Bo Xu</name></author><author><name sortKey="Fang, Jun" sort="Fang, Jun" uniqKey="Fang J" first="Jun" last="Fang">Jun Fang</name></author><author><name sortKey="Tang, Jiuyou" sort="Tang, Jiuyou" uniqKey="Tang J" first="Jiuyou" last="Tang">Jiuyou Tang</name></author><author><name sortKey="Luo, Anding" sort="Luo, Anding" uniqKey="Luo A" first="Anding" last="Luo">Anding Luo</name></author><author><name sortKey="Cao, Shouyun" sort="Cao, Shouyun" uniqKey="Cao S" first="Shouyun" last="Cao">Shouyun Cao</name></author><author><name sortKey="Li, Gupo" sort="Li, Gupo" uniqKey="Li G" first="Gupo" last="Li">Gupo Li</name></author><author><name sortKey="Qian, Qian" sort="Qian, Qian" uniqKey="Qian Q" first="Qian" last="Qian">Qian Qian</name></author><author><name sortKey="Xue, Yongbiao" sort="Xue, Yongbiao" uniqKey="Xue Y" first="Yongbiao" last="Xue">Yongbiao Xue</name></author><author><name sortKey="Chu, Chengcai" sort="Chu, Chengcai" uniqKey="Chu C" first="Chengcai" last="Chu">Chengcai Chu</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2009">2009</date><idno type="RBID">pubmed:19447374</idno><idno type="pmid">19447374</idno><idno type="doi">10.1016/S1673-8527(08)60114-9</idno><idno type="wicri:Area/Main/Corpus">003564</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">003564</idno><idno type="wicri:Area/Main/Curation">003564</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">003564</idno><idno type="wicri:Area/Main/Exploration">003564</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Molecular analysis of rice plants harboring a multi-functional T-DNA tagging system.</title><author><name sortKey="Ma, Yimian" sort="Ma, Yimian" uniqKey="Ma Y" first="Yimian" last="Ma">Yimian Ma</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Plant Genomics and National Plant Gene Research Center (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Plant Genomics and National Plant Gene Research Center (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Liu, Luo" sort="Liu, Luo" uniqKey="Liu L" first="Luo" last="Liu">Luo Liu</name></author><author><name sortKey="Zhu, Chengguang" sort="Zhu, Chengguang" uniqKey="Zhu C" first="Chengguang" last="Zhu">Chengguang Zhu</name></author><author><name sortKey="Sun, Changhui" sort="Sun, Changhui" uniqKey="Sun C" first="Changhui" last="Sun">Changhui Sun</name></author><author><name sortKey="Xu, Bo" sort="Xu, Bo" uniqKey="Xu B" first="Bo" last="Xu">Bo Xu</name></author><author><name sortKey="Fang, Jun" sort="Fang, Jun" uniqKey="Fang J" first="Jun" last="Fang">Jun Fang</name></author><author><name sortKey="Tang, Jiuyou" sort="Tang, Jiuyou" uniqKey="Tang J" first="Jiuyou" last="Tang">Jiuyou Tang</name></author><author><name sortKey="Luo, Anding" sort="Luo, Anding" uniqKey="Luo A" first="Anding" last="Luo">Anding Luo</name></author><author><name sortKey="Cao, Shouyun" sort="Cao, Shouyun" uniqKey="Cao S" first="Shouyun" last="Cao">Shouyun Cao</name></author><author><name sortKey="Li, Gupo" sort="Li, Gupo" uniqKey="Li G" first="Gupo" last="Li">Gupo Li</name></author><author><name sortKey="Qian, Qian" sort="Qian, Qian" uniqKey="Qian Q" first="Qian" last="Qian">Qian Qian</name></author><author><name sortKey="Xue, Yongbiao" sort="Xue, Yongbiao" uniqKey="Xue Y" first="Yongbiao" last="Xue">Yongbiao Xue</name></author><author><name sortKey="Chu, Chengcai" sort="Chu, Chengcai" uniqKey="Chu C" first="Chengcai" last="Chu">Chengcai Chu</name></author></analytic><series><title level="j">Journal of genetics and genomics = Yi chuan xue bao</title><idno type="ISSN">1673-8527</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosomes, Plant (genetics)</term><term>DNA, Bacterial (genetics)</term><term>Genes, Reporter (MeSH)</term><term>Genetic Vectors (genetics)</term><term>Genome, Plant (MeSH)</term><term>Glucuronidase (genetics)</term><term>Glucuronidase (metabolism)</term><term>Mutagenesis, Insertional (MeSH)</term><term>Oryza (genetics)</term><term>Oryza (growth & development)</term><term>Oryza (metabolism)</term><term>Rhizobium (genetics)</term><term>Rhizobium (metabolism)</term><term>Transformation, Genetic (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>Chromosomes de plante (génétique)</term><term>Glucuronidase (génétique)</term><term>Glucuronidase (métabolisme)</term><term>Gènes rapporteurs (MeSH)</term><term>Génome végétal (MeSH)</term><term>Mutagenèse par insertion (MeSH)</term><term>Oryza (croissance et développement)</term><term>Oryza (génétique)</term><term>Oryza (métabolisme)</term><term>Rhizobium (génétique)</term><term>Rhizobium (métabolisme)</term><term>Transformation génétique (MeSH)</term><term>Vecteurs génétiques (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>Glucuronidase</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Oryza</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term><term>Genetic Vectors</term><term>Oryza</term><term>Rhizobium</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Oryza</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>Chromosomes de plante</term><term>Glucuronidase</term><term>Oryza</term><term>Rhizobium</term><term>Vecteurs génétiques</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Glucuronidase</term><term>Oryza</term><term>Rhizobium</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Glucuronidase</term><term>Oryza</term><term>Rhizobium</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genes, Reporter</term><term>Genome, Plant</term><term>Mutagenesis, Insertional</term><term>Transformation, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Gènes rapporteurs</term><term>Génome végétal</term><term>Mutagenèse par insertion</term><term>Transformation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">About 25,000 rice T-DNA insertional mutant lines were generated using the vector pCAS04 which has both promoter-trapping and activation-tagging function. Southern blot analysis revealed that about 40% of these mutants were single copy integration and the average T-DNA insertion number was 2.28. By extensive phenotyping in the field, quite a number of agronomically important mutants were obtained. Histochemical GUS assay with 4,310 primary mutants revealed that the GUS-staining frequency was higher than that of the previous reports in various tissues and especially high in flowers. The T-DNA flanking sequences of some mutants were isolated and the T-DNA insertion sites were mapped to the rice genome. The flanking sequence analysis demonstrated the different integration pattern of the right border and left border into rice genome. Compared with Arabidopsis and poplar, it is much varied in the T-DNA border junctions in rice.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19447374</PMID><DateCompleted><Year>2009</Year><Month>06</Month><Day>24</Day></DateCompleted><DateRevised><Year>2015</Year><Month>11</Month><Day>19</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">1673-8527</ISSN><JournalIssue CitedMedium="Internet"><Volume>36</Volume><Issue>5</Issue><PubDate><Year>2009</Year><Month>May</Month></PubDate></JournalIssue><Title>Journal of genetics and genomics = Yi chuan xue bao</Title><ISOAbbreviation>J Genet Genomics</ISOAbbreviation></Journal><ArticleTitle>Molecular analysis of rice plants harboring a multi-functional T-DNA tagging system.</ArticleTitle><Pagination><MedlinePgn>267-76</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/S1673-8527(08)60114-9</ELocationID><Abstract><AbstractText>About 25,000 rice T-DNA insertional mutant lines were generated using the vector pCAS04 which has both promoter-trapping and activation-tagging function. Southern blot analysis revealed that about 40% of these mutants were single copy integration and the average T-DNA insertion number was 2.28. By extensive phenotyping in the field, quite a number of agronomically important mutants were obtained. Histochemical GUS assay with 4,310 primary mutants revealed that the GUS-staining frequency was higher than that of the previous reports in various tissues and especially high in flowers. The T-DNA flanking sequences of some mutants were isolated and the T-DNA insertion sites were mapped to the rice genome. The flanking sequence analysis demonstrated the different integration pattern of the right border and left border into rice genome. Compared with Arabidopsis and poplar, it is much varied in the T-DNA border junctions in rice.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Yimian</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Plant Genomics and National Plant Gene Research Center (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Luo</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Chengguang</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Changhui</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Bo</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Fang</LastName><ForeName>Jun</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Jiuyou</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Anding</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Cao</LastName><ForeName>Shouyun</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Gupo</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Qian</LastName><ForeName>Qian</ForeName><Initials>Q</Initials></Author><Author ValidYN="Y"><LastName>Xue</LastName><ForeName>Yongbiao</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Chu</LastName><ForeName>Chengcai</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>China</Country><MedlineTA>J Genet Genomics</MedlineTA><NlmUniqueID>101304616</NlmUniqueID><ISSNLinking>1673-8527</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C036483">T-DNA</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.2.1.31</RegistryNumber><NameOfSubstance UI="D005966">Glucuronidase</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017930" MajorTopicYN="N">Genes, Reporter</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005822" MajorTopicYN="N">Genetic Vectors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005966" MajorTopicYN="N">Glucuronidase</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016254" MajorTopicYN="Y">Mutagenesis, Insertional</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012275" MajorTopicYN="N">Oryza</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012231" MajorTopicYN="N">Rhizobium</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014170" MajorTopicYN="N">Transformation, Genetic</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2008</Year><Month>12</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2009</Year><Month>02</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2009</Year><Month>02</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2009</Year><Month>5</Month><Day>19</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2009</Year><Month>5</Month><Day>19</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2009</Year><Month>6</Month><Day>25</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">19447374</ArticleId><ArticleId IdType="pii">S1673-8527(08)60114-9</ArticleId><ArticleId IdType="doi">10.1016/S1673-8527(08)60114-9</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><noCountry><name sortKey="Cao, Shouyun" sort="Cao, Shouyun" uniqKey="Cao S" first="Shouyun" last="Cao">Shouyun Cao</name><name sortKey="Chu, Chengcai" sort="Chu, Chengcai" uniqKey="Chu C" first="Chengcai" last="Chu">Chengcai Chu</name><name sortKey="Fang, Jun" sort="Fang, Jun" uniqKey="Fang J" first="Jun" last="Fang">Jun Fang</name><name sortKey="Li, Gupo" sort="Li, Gupo" uniqKey="Li G" first="Gupo" last="Li">Gupo Li</name><name sortKey="Liu, Luo" sort="Liu, Luo" uniqKey="Liu L" first="Luo" last="Liu">Luo Liu</name><name sortKey="Luo, Anding" sort="Luo, Anding" uniqKey="Luo A" first="Anding" last="Luo">Anding Luo</name><name sortKey="Qian, Qian" sort="Qian, Qian" uniqKey="Qian Q" first="Qian" last="Qian">Qian Qian</name><name sortKey="Sun, Changhui" sort="Sun, Changhui" uniqKey="Sun C" first="Changhui" last="Sun">Changhui Sun</name><name sortKey="Tang, Jiuyou" sort="Tang, Jiuyou" uniqKey="Tang J" first="Jiuyou" last="Tang">Jiuyou Tang</name><name sortKey="Xu, Bo" sort="Xu, Bo" uniqKey="Xu B" first="Bo" last="Xu">Bo Xu</name><name sortKey="Xue, Yongbiao" sort="Xue, Yongbiao" uniqKey="Xue Y" first="Yongbiao" last="Xue">Yongbiao Xue</name><name sortKey="Zhu, Chengguang" sort="Zhu, Chengguang" uniqKey="Zhu C" first="Chengguang" last="Zhu">Chengguang Zhu</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Ma, Yimian" sort="Ma, Yimian" uniqKey="Ma Y" first="Yimian" last="Ma">Yimian Ma</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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